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Home » Recipes » Muffins

Oil Free Apple Protein Muffins (Whole Wheat)

Published: Nov 21, 2020 · Last Modified: Feb 21, 2025 by Haylee Jane Monteiro · This post may contain affiliate links

Soft and fluffy Oil Free Apple Protein Muffins with whole wheat flour for a healthy breakfast, dessert or even post-workout meal! Perfectly spiced, full of apple chunks, and sweetened with protein powder, these apple protein muffins are sugar-free and delicious at the same time.

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Soft and fluffy Oil Free Apple Protein Muffins with whole wheat flour for a healthy breakfast, dessert or even post-workout meal! Perfectly spiced, full of apple chunks, and sweetened with protein powder, these apple protein muffins are sugar-free and delicious at the same time.

Do you see the rise here?!

This is without a doubt the BEST rise I’ve ever gotten on a muffin recipe.

There’s a trick to that, but I’m not going to reveal it here – go check out the details on my website recipe post. This is one thing I’m going to be doing for all my muffins going forward.

Other than that rise though, these apple protein muffins were also just perfectly moist – not at all dry like other typical protein powder baked goods.

Another good thing about them? They’re oil free and sugar free, and so low calorie that I “had” to eat 1⅔ as part of my breakfast just so I could meet my macro needs for the meal.

Complaints? Pssht!

Oil Free Apple Protein Muffins Ingredients:

This recipe for whole wheat Apple Protein Muffins is as healthy as it gets – no oil or butter, no sugar, no buttermilk, but instead Applesauce, Greek Yogurt and Protein powder!

Here’s what you need to make a batch of this good stuff:

  • Whole Wheat Pastry Flour for a healthy, nutritious and whole grain muffin recipe that’s still light and fluffy!
    Feel free to use regular all purpose flour if you wish.
  • Vanilla Protein Powder as a replacement for the sugar – this is what makes this a sugarfree protein muffin recipe; I use Quest Vanilla protein powder 
  • Unflavored Protein Powder to replace some of the flour (and carbs) in the recipe for a slightly lower carb high protein brownie. Quest Nutriton Multi-purpose here.
  • Unsweetened Applesauce to replace most of the fat in the normal recipes, and also add some more apple flavor.
  • Non-fat Greek Yogurt to add even more protein and keep these low fat
  • Almond Milk for some moisture
    Also makes this a dairy free muffin recipe. Feel fee to use any other non dairy or normal milk
  • Eggs
  • Cinnamon because cinnamon apple protein muffins just sound so much butter
  • Baking Soda and Baking Powder – you need them both for that perfect rise!

And then for the key apple-ness

  • Finely Chopped Apples – You can even grate them if you’d like. I used the Fuji, but any other type will work as well.
  • 1:1 Sugar Free Brown Sugar Replacement: I used Lakanto brown monk fruit sweetener so that the cinnamon sugar pop tart is sugar free (code HAYLSKITCHEN gets you a discount here)
  • Cinnamon
Soft and fluffy Oil Free Apple Protein Muffins with whole wheat flour for a healthy breakfast, dessert or even post-workout meal! Perfectly spiced, full of apple chunks, and sweetened with protein powder, these apple protein muffins are sugar-free and delicious at the same time.

Things to keep in mind for these Apple Pie Protein Muffins

This recipe for apple pie protein muffins really is quite easy, but here’s some tips to get them perfectly light and fluffy.

  • Use unsweetened applesauce so there’s no added sugars in the recipe
  • Don’t over-mix the batter!
    Pour the dry mix into the dry and just fold them together or too much gluten will develop, again giving you dense and gummy muffins. The protein powder could also cause toughness.
  • Don’t skip out on the almond milk or the yogurt
    They add a fair bit of moisture to the muffins since there’s no oil here, also the protein powder in the muffins needs extra moisture.
  • Chop the apples fine of the large chunks might mess up the cooking
  • Spray the insides of the muffin pan with oil spray so the muffins come off easily.

How to get that rise?

This is the trick to get these cinnamon apple protein puffins to have that extra rise like those bakery style apple muffins!

All credit here goes to Sally’s Baking Addiction.

  1. For 5 minutes, bake the muffins at 425.
  2. Then lower the heat to and continue to bake for another 18 minutes (the total time should be about 22 minutes).

Why?

That initial hot air makes the tops rise, and then the lower temperature lets the muffins continue to cook on the inside.

Check for doneness?
Just like you usually would: a tester inserted into the center should come out dry.

Soft and fluffy Oil Free Apple Protein Muffins with whole wheat flour for a healthy breakfast, dessert or even post-workout meal! Perfectly spiced, full of apple chunks, and sweetened with protein powder, these apple protein muffins are sugar-free and delicious at the same time.

Can you store Apple Cinnamon Protein Muffins?

With such a low calorie and reduced fat recipe, these protein apple cinnamon muffins are completely to okay to indulge in; I myself had nearly 2 at a time!

If they do last long, don’t worry; This oil free apple muffin recipe keeps really well and is great for a meal prep breakfast, snack or dessert – freezer friendly too! 

You can keep the whole wheat apple muffins out at room temperature on the countertop for 2 or 3 days, or in the fridge for or 4 or 5 days. Be sure to use an airtight container.

To freeze the healthy apple muffins, wrap them plastic wrap, and place in a freezer-safe zipper bag. They’ll last for 2 or 3 months. Thaw them when you want fall spiced apple dessert at Thanksgiving!

Some alternatives for these Healthy Apple Muffins:

I made these healthy apple mufffins with the whole wheat pastry flour and protein powder as described, but here’s some other clean ingredients to try:

  • Whole Wheat Pastry Flour: All purpose flour or 1:1 Gluten Free Baking Flour, in the same amount by weight not cups.
  • Unflavored Protein Powder: 45g more Flour, but also reduce yogurt to ½ cup (112g)
  • Greek Yogurt: Coconut Yogurt
  • Almond Milk: Any other milk 
  • 1:1 Zero Calorie Brown Sugar Replacement: Regular brown sugar or coconut sugar (this won’t be sugar free though, and also higher in calories)
    Or just leave it out.

Some more Protein Muffin Recipes to try:

  • Spinach Protein Muffins
  • Chocolate Stuffed Churro Protein Muffins
  • Low Calorie Chocolate Protein Muffins
  • Cranberry Eggnog Protein Muffins
  • Pumpkin Cream Cheese Protein Muffins (The Best Starbucks Copycat)
  • Protein Monkey Bread Muffins

And some more Apple Protein Powder baking recipes:

  • Caramel Apple Protein Bars
  • Protein Apple Cobbler for One
  • Cinnamon Apple Protein Pancake Bread
  • Protein Apple Cupcakes with Protein Peanut Butter Frosting

Apple Protein Muffins (Oil Free & Whole Wheat)

5 from 2 votes
Print recipe Pin Recipe
Prep Time10 minutes mins
Cook Time23 minutes mins
Total Time33 minutes mins
Servings: 14 muffins
Calories: 109kcal
Course: Breakfast, Dessert, Post-Workout
Cuisine: American, Thanksgiving
Soft and fluffy Oil Free Apple Protein Muffins with whole wheat flour for a healthy breakfast, dessert or even post-workout meal! Perfectly spiced, full of apple chunks, and sweetened with protein powder, these apple protein muffins are sugar-free and delicious at the same time.

Ingredients

  • 1½ cups Whole Wheat Pastry Flour, 180g
  • ⅔ cup Vanilla Protein Powder, Whey-casein, 60g, 2 scoops
  • ½ cup Unflavored Protein Powder, Whey-casein, 45g
  • 2 teaspoon Cinnamon
  • 2 teaspoon Baking Powder
  • 1 teaspoon Baking Soda
  • 1 cup Unsweetened Applesauce, 240g
  • ¾ cup Non-fat Green Yogurt, 168g
  • 6 tablespoon Unsweetened Almond Milk, 90ml
  • 3 Eggs
  • ½ Medium Apple, Cored and Finely Chopped/Grated, 90g

Topping:

  • ½ Medium Apple, Cored and Finely Chopped/Grated, 90g
  • (Optional) 1 teaspoon Zero Calorie 1:1 Brown Sugar Substitute, or regular Brown/Coconut Sugar
  • (Optional) ½ teaspoon Cinnamon

Instructions

  • Preheat oven to 425°F, line a 14 muffin cups – 12-cup pan and 2 more – with cupcake liners, and lightly spray insides with cooking spray.
  • In a large bowl, whisk together whole wheat pastry flour, vanilla protein powder, unflavored protein powder, cinnamon, baking powder and baking soda.
  • In another bowl, whisk applesauce, Greek yogurt, almond milk and eggs.
  • Add dry mix to wet, and gently fold until combined.
  • Add copped apples and gently fold again. DO NOT OVER-MIX or too much gluten will form from the wheat flour, and make the muffins dense.
  • Divide the batter among muffin cups, about ¾ way to the top.
  • In a bowl, toss chopped apples, brown sugar and cinnamon.
    Sprinkle on top of muffins.
  • Bake for 5 minutes, then reduce temperature to 350°F (leaving muffins in oven) and bake another 13-15 minutes (total of 18-23 min).
    A toothpick inserted into center should come out dry.
  • Cool for 10 minutes, then remove pan. Transfer to a wire rack to cool completely, about 15 minutes, and enjoy.

Notes

  • Nutrition value is calculated using products recommended below.
  • See post for alternate ingredients, tips and storage options.
Product Recommendations:
  • Quest Nutrition Vanilla Milkshake Protein Powder
  • Quest Nutrition Multi-purpose Mix (Unflavored) Protein Powder
  • Lakanto Brown Monkfruit Sweetener
    • Use code HAYLSKITCHEN for 15% off your order
Nutrition:
  • Servings: 14 muffins | Serving size: 1
  • Calories: 109kcal
  • Fat: 1.5g | Saturated fat: 0.3g
  • Carbohydrates: 15.6g | Fiber: 2.8g | Sugar: 3.3g
  • Protein: 10.2g

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Comments

  1. Erin says

    March 22, 2024 at 7:42 am

    5 stars
    I found that this recipe gave me 24 regular sized muffins instead of 14. Did you use the extra large muffin tins? Also, I didn’t see when to put in the unflavored protein powder, so I just put it in with the dry ingredients.

    Reply
    • Haylee Jane Monteiro says

      April 04, 2024 at 8:52 pm

      My muffin tin was a little large so probably that’s why. Also just updated the post for the unflavored protein powder. Thanks for pointing that out.

      Reply
  2. Jamilet says

    March 26, 2022 at 5:56 pm

    5 stars
    These were delicious !! I’ve been on the hunt for some baked treat that my husband and I can feel good about! We’ve tried our fair share of “healthy” treats and have been disappointed but, these are solid!

    I followed the recipe to a T this first time and my husband gave it his seal of approval. I would say they could use a little salt, and MAYBE the smallest bit of sweetener if you like things sweet but these are really good on they’re own. Oh! Maybe add some chopped walnuts??! If you really want to indulge you could totally pop one in the microwave and have a scoop of vanilla ice cream.

    Thank you so much for this recipe!

    Reply
    • Haylee Jane Monteiro says

      May 20, 2022 at 10:56 pm

      So happy to hear that Jamilet! Even moreso because of the husband’s approval, haha.

      The ice cream with these muffins definitely is a game changer!

      Reply
  3. apurva says

    August 04, 2021 at 6:09 am

    Hi! If I wanted to add some carrots to this recipe what else would I have to change?

    Reply
    • Haylee Jane Monteiro says

      August 05, 2021 at 9:17 am

      Hi Apurva! I don’t think think you would need to switch anything else out here if you use carrots in these muffins 🙂 Just be sure to use freshly grated/finely chopped carrots – not the matchstick carrots from the stores.
      Can’t wait to know what you think of this!

      On another note, if you’re interested in something with carrots, I’d also really recommend this Protein Carrot Cake Loaf: https://www.haylskitchen.com/best-protein-carrot-cake-loaf

      Reply

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Hi, I'm Haylee!

I use my passion for baking (and my sweet tooth) to create healthy, high protein, low fat and sugar free desserts and sweet treats that are actually delicious.

Come join me in Hayl's Kitchen and let's eat high protein, sweet and guilt free!

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