Ultimate Healthy Apple Pie Lasagna - High Protein & Easy!

Healthy Apple Pie Lasagna is the ultimate twist on a classic holiday pie. Crunchy pie crust, high protein pudding, low-sugar apple pie filling and protein whipped topping - a decadent dessert without guilt.

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You know how sometimes a recipe just needs to happen? That was the case with this layered apple lasagna dessert. I had a lonely frozen pie crust in the freezer I wanted to use up, my husband had been begging for apple pie all week, and I know he absolutely loves my lasagna recipes. So, I figured, why not combine the two into one epic, macro-friendly creation?

And let me tell you, the result was magic. I gave my husband a slice-just a small taste, mind you, while I was filming his reaction for Instagram-and he just stopped. He ate the whole slice, right there on the spot! He looked at me and said, "You've completely outdone yourself with this one."
I was really touched there <3.

Plus, the apple pie filling came out so perfectly spiced and thick, I'm now planning on posting it as a separate recipe!

If you're looking for an easy apple dessert that will wow absolutely everyone (even the tough critics!) while keeping things light, this skinny apple pie lasagna is the one you need.

This isn't just any dessert; it's a game-changer. It's got a crunchy crust, a creamy, high-protein layer made with Greek yogurt, and a spiced apple filling that will make you feel like you're cheating (spoiler: you're not!). Whether you're planning your menu for the holidays or just need a delicious, healthy apple pie lasagna recipe, this is it. It's so simple-you'll be shocked at how incredible this skinny apple lasagna recipe tastes!

Ingredients for Your Apple Pie Lasagna with Greek Yogurt

This easy apple pie lasagna uses smart swaps to boost protein and cut down on sugar and fat.

The Crust

Frozen Ready-to-Bake Pie Crust (like Pillsbury): The foundation of our apple pie lasagna, providing a satisfying, buttery crunch you get from a pie.

Apple Pie Filling

Chopped Apples: The heart of the filling!
Water: Used to help the apples soften and caramelize without relying on butter or oil.
Zero Calorie Brown Sugar (or regular): Provides that deep, molasses-like sweetness essential for a perfect apple filling. I use Lakanto.
Cinnamon and Ground Nutmeg: The perfect spice blend for that old-fashioned apple pie flavor.
Unflavored Collagen & Water (for slurry): The secret to achieving that thick, apple pie filling consistency without cornstarch or flour.
I recommend Vital Proteins.

For the Protein Pudding

Non-fat Greek Yogurt for extra high protein, or coconut yogurt
Vanilla Protein Powder; I used half whey-casein from Quest Nutrition and half whey from Peachie Spoon.
Sugar free Cheesecake flavor Instant Pudding Mix: Simply Delish for a Vegan and sugar free recipe, or Jello.
A bit of Unsweetened Almond Milk

The Topping:

Reduced Fat Cool Whip - A light and airy topping that is easy to mix with protein.
More Vanilla Protein Powder from Peachie Spoon
Caramel Sauce or Peanut Butter
Cocoa Powder for dusting

See recipe card at the bottom of the page for the measurements!

Alternate Ingredients for a Low-Calorie Apple Lasagna Dessert

One of the best things about this apple lasagna dessert low calorie style is how flexible it is!

Pie Crust: You can use graham cracker crumbs mixed with melted light butter for a no-bake apple pie lasagna version, or use a whole-wheat crust for added fiber.
Cheesecake Pudding Mix: If you can't find cheesecake flavor, vanilla or white chocolate instant pudding mix will work perfectly.
Protein Powder: Any brand of vanilla whey or casein protein powder should work well here. If using plant-based protein, you might need a little extra sweetener or vanilla extract to adjust the flavor, ane milk to adjust the thickness.
Apples: Feel free to mix up the types of apples! Granny Smith (for tartness) mixed with Honeycrisp (for sweetness) is a winning combination.
Collagen: If you don't have collagen, you can substitute it with 1 Tbso cornstarch instead!
Sugar-free Cool Whip - Feel free to use any whipped topping! Even a dairy free version works.

How to Make Healthy Apple Pie Lasagna

Follow these steps to create your perfect apple pie lasagna recipe!

Pie Crust

Preheat the oven to 450°F (232°C).
Roll your ready-to-bake pie crust into a 9x9-inch pan dish (or use a pre-rolled crust). Trim the sides if necessary.
Bake for 12-15 minutes or until golden brown.
Remove the crust from the oven and let it cool completely (this usually takes about 25 minutes).

Apple Pie Filling

Heat a large skillet over medium heat. Add the chopped apples and 2 tablespoons of water. Cook until the apples begin to soften and the water has dried up.
Add more water, the zero-calorie brown sweetener, cinnamon, and nutmeg. Cook for about 5-6 minutes, shaking the pan occasionally, until the apples are slightly caramelized. Continue adding water as needed to prevent sticking. The apples should be caramelized but still have some extra liquid in the pan.
In a small bowl, stir together the collagen and 1-2 tablespoons of water to form a slurry.
Turn off the heat, pour in the collagen slurry, and stir quickly to thicken the apple mixture. You should achieve a true apple pie filling consistency.
Tip: Don't Overcook the Apples: The apples should be soft but still have a slight bite to them. This provides great textural contrast against the smooth pudding.
Transfer the filling to a bowl and let it cool for 5-10 minutes.

Pudding

In a bowl, mix the Greek yogurt, protein powder, instant pudding mix, and almond milk (add the milk gradually) until the mixture is completely smooth and creamy.
Tip: Taste the mixture and make sure you like it; Add extra sweetener or vanilla extract if you need!

Cool Whip Topping

In a separate bowl, mix the thawed Cool Whip topping and protein powder until just combined and fluffy.
Tip: Use thawed cool whip topping (not frozen) so that it actually spreads easily.

Assemble and Chill

Make sure both the crust and the apple filling are completely cool before you assemble the layers. This prevents the pudding layer from melting or becoming runny.

Spread the pudding mixture evenly over the cooled pie crust.
Top with the apple pie mixture, spreading it to cover the entire surface.
Carefully spread the cool whip mixture on top of the apple layer.
Cover the pan with plastic wrap and chill for 2-4 hours in the fridge. This is crucial for the layers to set!
Tip: Don't skip this! This allows the instant pudding to set the Greek yogurt, ensuring your apple pie lasagna with Greek yogurt slices cleanly.
Drizzle with some caramel syrup or peanut butter. Cut into 9 pieces and enjoy your delicious thanksgiving lasagna dessert!

Storage Instructions for Your Skinny Apple Lasagna Recipe

This delicious layered dessert is perfect for making ahead!

Refrigeration: Store any leftovers of the skinny apple lasagna covered tightly with plastic wrap in the refrigerator for up to 4 days.
NO Freezing: This recipe does not freeze well due to the high moisture content of the Cool Whip and Greek yogurt layers. It's best enjoyed fresh after chilling!

FAQs for Perfect Low-Sugar Apple Pie Lasagna

Is this layered apple lasagna dessert suitable for Thanksgiving?

Absolutely! This thanksgiving lasagna dessert is a lighter, high-protein alternative to traditional apple pie and is a guaranteed crowd-pleaser.

How does this recipe qualify as a low-sugar apple pie lasagna?

We drastically reduce the sugar by using zero-calorie brown sugar replacement in the apples, sugar-free instant pudding mix, and high-protein Greek yogurt instead of heavy cream and refined sugar.

Why do I need the collagen in the apple filling?

The collagen creates a slurry that acts as a powerful, protein-packed thickener instead for the apple pie filing instead of cornstarch.

If you were interested in this one, here's some more recipes you might like:

Did you try this recipe? I'd LOVE to know!
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